Yes, it should perform the meridian flip.
Not flipping during a meridian flip is a common issue.
It is usually fixed by setting the "Flip if HA > ..." parameter on the Mount Page.
I tend to use 0.25 hours, others use different values, it's mount dependent.
For a recent related thread, see:
indilib.org/forum/ekos/10336-meridian-flip-issue.html#76522
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